| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 16372 | 2019 |
| The treatment-naive microbiome in new-onset Crohn’s disease D Gevers, S Kugathasan, LA Denson, Y Vázquez-Baeza, W Van Treuren, ... Cell host & microbe 15 (3), 382-392, 2014 | 3492 | 2014 |
| A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457-463, 2017 | 2446 | 2017 |
| Cohabiting family members share microbiota with one another and with their dogs SJ Song, C Lauber, EK Costello, CA Lozupone, G Humphrey, ... elife 2, e00458, 2013 | 1247 | 2013 |
| Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer MG Dominguez-Bello, KM De Jesus-Laboy, N Shen, LM Cox, A Amir, ... Nature medicine 22 (3), 250-253, 2016 | 1105 | 2016 |
| QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018 | 1014 | 2018 |
| The microbiome of uncontacted Amerindians JC Clemente, EC Pehrsson, MJ Blaser, K Sandhu, Z Gao, B Wang, ... Science advances 1 (3), e1500183, 2015 | 935 | 2015 |
| Microbiome analyses of blood and tissues suggest cancer diagnostic approach GD Poore, E Kopylova, Q Zhu, C Carpenter, S Fraraccio, S Wandro, ... Nature 579 (7800), 567, 2020 | 923 | 2020 |
| American gut: an open platform for citizen science microbiome research D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... Msystems 3 (3), 10.1128/msystems. 00031-18, 2018 | 728 | 2018 |
| Advancing our understanding of the human microbiome using QIIME JA Navas-Molina, JM Peralta-Sánchez, A González, PJ McMurdie, ... Methods in enzymology 531, 371-444, 2013 | 658 | 2013 |
| Microbial community assembly and metabolic function during mammalian corpse decomposition JL Metcalf, ZZ Xu, S Weiss, S Lax, W Van Treuren, ER Hyde, SJ Song, ... Science 351 (6269), 158-162, 2016 | 529 | 2016 |
| The human microbiome in evolution ER Davenport, JG Sanders, SJ Song, KR Amato, AG Clark, R Knight BMC biology 15, 1-12, 2017 | 437 | 2017 |
| The effects of captivity on the mammalian gut microbiome VJ McKenzie, SJ Song, F Delsuc, TL Prest, AM Oliverio, TM Korpita, ... Integrative and comparative biology 57 (4), 690-704, 2017 | 408 | 2017 |
| Preservation methods differ in fecal microbiome stability, affecting suitability for field studies SJ Song, A Amir, JL Metcalf, KR Amato, ZZ Xu, G Humphrey, R Knight MSystems 1 (3), 10.1128/msystems. 00021-16, 2016 | 405 | 2016 |
| Convergence of gut microbiomes in myrmecophagous mammals F Delsuc, JL Metcalf, L Wegener Parfrey, SJ Song, A González, R Knight Molecular ecology 23 (6), 1301-1317, 2014 | 346 | 2014 |
| From superspreaders to disease hotspots: linking transmission across hosts and space SH Paull, S Song, KM McClure, LC Sackett, AM Kilpatrick, PTJ Johnson Frontiers in Ecology and the Environment 10 (2), 75-82, 2012 | 331 | 2012 |
| Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes KR Amato, JG Sanders, SJ Song, M Nute, JL Metcalf, LR Thompson, ... The ISME journal 13 (3), 576-587, 2019 | 284 | 2019 |
| The bee microbiome: impact on bee health and model for evolution and ecology of host-microbe interactions P Engel, WK Kwong, Q McFrederick, KE Anderson, SM Barribeau, ... MBio 7 (2), 10.1128/mbio. 02164-15, 2016 | 272 | 2016 |
| Comparative analyses of vertebrate gut microbiomes reveal convergence between birds and bats SJ Song, JG Sanders, F Delsuc, J Metcalf, K Amato, MW Taylor, F Mazel, ... MBio 11 (1), 10.1128/mbio. 02901-19, 2020 | 271 | 2020 |
| Learning representations of microbe–metabolite interactions JT Morton, AA Aksenov, LF Nothias, JR Foulds, RA Quinn, MH Badri, ... Nature methods 16 (12), 1306-1314, 2019 | 256 | 2019 |
Rob KnightWolfe Family Chair at Rady Children's; Director, Center for Microbiome Innovation; Professor, UCSDVerified email at ucsd.edu
