Rodrigo Galindo-Murillo
Rodrigo Galindo-Murillo
Principal scientist - IONIS Pharmaceuticals, Inc
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Refinement of the sugar–phosphate backbone torsion beta for AMBER force fields improves the description of Z-and B-DNA
M Zgarbová, J Sponer, M Otyepka, TE Cheatham III, R Galindo-Murillo, ...
Journal of chemical theory and computation 11 (12), 5723-5736, 2015
Assessing the current state of amber force field modifications for DNA
R Galindo-Murillo, JC Robertson, M Zgarbova, J Sponer, M Otyepka, ...
Journal of chemical theory and computation 12 (8), 4114-4127, 2016
Convergence and reproducibility in molecular dynamics simulations of the DNA duplex d (GCACGAACGAACGAACGC)
R Galindo-Murillo, DR Roe, TE Cheatham III
Biochimica et Biophysica Acta (BBA)-General Subjects 1850 (5), 1041-1058, 2015
Intercalation processes of copper complexes in DNA
R Galindo-Murillo, JC García-Ramos, L Ruiz-Azuara, TE Cheatham, ...
Nucleic acids research 43 (11), 5364-5376, 2015
Metal-based drug-DNA interactions
JC García-Ramos, R Galindo-Murillo, F Cortés-Guzmán, L Ruiz-Azuara
Journal of the Mexican Chemical Society 57 (3), 245-259, 2013
On the absence of intrahelical DNA dynamics on the μs to ms timescale
R Galindo-Murillo, DR Roe, TE Cheatham III
Nature communications 5 (1), 5152, 2014
Ethidium bromide interactions with DNA: an exploration of a classic DNA–ligand complex with unbiased molecular dynamics simulations
R Galindo-Murillo, TE Cheatham III
Nucleic acids research 49 (7), 3735-3747, 2021
Molecular recognition between DNA and a copper-based anticancer complex
R Galindo-Murillo, L Ruíz-Azuara, R Moreno-Esparza, F Cortés-Guzmán
Physical Chemistry Chemical Physics 14 (44), 15539-15546, 2012
Defining a conformational ensemble that directs activation of PPARγ
IM Chrisman, MD Nemetchek, IMS De Vera, J Shang, Z Heidari, Y Long, ...
Nature communications 9 (1), 1794, 2018
Transitions of double-stranded DNA between the A-and B-forms
JT Waters, XJ Lu, R Galindo-Murillo, JC Gumbart, HD Kim, ...
The Journal of Physical Chemistry B 120 (33), 8449-8456, 2016
π-Stacking between Casiopeinas® and DNA bases
R Galindo-Murillo, J Hernandez-Lima, M González-Rendón, ...
Physical Chemistry Chemical Physics 13 (32), 14510-14515, 2011
Whole genome gene expression analysis reveals casiopeina-induced apoptosis pathways
AI Valencia-Cruz, LI Uribe-Figueroa, R Galindo-Murillo, K Baca-Lopez, ...
PloS one 8 (1), e54664, 2013
The π‐Back‐Bonding Modulation and Its Impact in the Electronic Properties of CuII Antineoplastic Compounds: An Experimental and Theoretical Study
JC García‐Ramos, R Galindo‐Murillo, A Tovar‐Tovar, AL Alonso‐Saenz, ...
Chemistry–A European Journal 20 (42), 13730-13741, 2014
Oxazinin A, a pseudodimeric natural product of mixed biosynthetic origin from a filamentous fungus
Z Lin, M Koch, MH Abdel Aziz, R Galindo-Murillo, MD Tianero, ...
Organic letters 16 (18), 4774-4777, 2014
In silico design of monomolecular drug carriers for the tyrosine kinase inhibitor drug imatinib based on calix-and thiacalix [n] arene host molecules: a DFT and molecular …
R Galindo-Murillo, ME Sandoval-Salinas, J Barroso-Flores
Journal of Chemical Theory and Computation 10 (2), 825-834, 2014
Calix [n] arene-based drug carriers: a DFT study of their electronic interactions with a chemotherapeutic agent used against leukemia
R Galindo-Murillo, A Olmedo-Romero, E Cruz-Flores, PM Petrar, ...
Computational and Theoretical Chemistry 1035, 84-91, 2014
Dissociative reactions of benzonorbornadienes with tetrazines: scope of leaving groups and mechanistic insights
M Xu, R Galindo-Murillo, TE Cheatham, RM Franzini
Organic & Biomolecular Chemistry 15 (46), 9855-9865, 2017
Sequence-dependent structural properties of B-DNA: what have we learned in 40 years?
G Da Rosa, L Grille, V Calzada, K Ahmad, JP Arcon, F Battistini, G Bayarri, ...
Biophysical Reviews, 1-11, 2021
Using wavelet analysis to assist in identification of significant events in molecular dynamics simulations
Z Heidari, DR Roe, R Galindo-Murillo, JB Ghasemi, TE Cheatham III
Journal of chemical information and modeling 56 (7), 1282-1291, 2016
Molecular modeling of nucleic acid structure
R Galindo‐Murillo, C Bergonzo, TE Cheatham III
Current protocols in nucleic acid chemistry 54 (1), 7.5. 1-7.5. 13, 2013
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Artículos 1–20