| Robust single-cell Hi-C clustering by convolution-and random-walk–based imputation J Zhou, J Ma, Y Chen, C Cheng, B Bao, J Peng, TJ Sejnowski, JR Dixon, ... Proceedings of the National Academy of Sciences 116 (28), 14011-14018, 2019 | 114 | 2019 |
| Expanding the diversity of bacterioplankton isolates and modeling isolation efficacy with large-scale dilution-to-extinction cultivation MW Henson, VC Lanclos, DM Pitre, JL Weckhorst, AM Lucchesi, C Cheng, ... Applied and environmental microbiology 86 (17), e00943-20, 2020 | 41 | 2020 |
| Laboratory evolution reveals a two-dimensional rate-yield tradeoff in microbial metabolism C Cheng, EJ O’brien, D McCloskey, J Utrilla, C Olson, RA LaCroix, ... PLoS computational biology 15 (6), e1007066, 2019 | 39 | 2019 |
| Ecophysiology and genomics of the brackish water adapted SAR11 subclade IIIa VC Lanclos, AN Rasmussen, CY Kojima, C Cheng, MW Henson, ... The ISME Journal 17 (4), 620-629, 2023 | 11 | 2023 |
| Sparse-growth-curve: a computational pipeline for parsing cellular growth curves with low temporal resolution C Cheng, JC Thrash Microbiology Resource Announcements 10 (19), 10.1128/mra. 00296-21, 2021 | 7 | 2021 |
| Functional Decomposition of Metabolism allows a system-level quantification of fluxes and protein allocation towards specific metabolic functions M Mori, C Cheng, BR Taylor, H Okano, T Hwa Nature Communications 14 (1), 4161, 2023 | 6 | 2023 |
| Ecophysiology of the Cosmopolitan OM252 Bacterioplankton (Gammaproteobacteria) ER Savoie, VC Lanclos, MW Henson, C Cheng, EW Getz, SJ Barnes, ... Msystems 6 (3), 10.1128/msystems. 00276-21, 2021 | 5 | 2021 |
| The AEGEAN-169 clade of bacterioplankton is synonymous with SAR11 subclade V (HIMB59) and metabolically distinct EW Getz, VC Lanclos, CY Kojima, C Cheng, MW Henson, ME Schön, ... Msystems 8 (3), e00179-23, 2023 | 3 | 2023 |
| Metagenome-Assembled Genome Sequence of Rhodobacteraceae Bacterium Strain Clear-D3, Assembled from a Dolichospermum Consortium from Clear Lake … C Cheng, KM Florea, EA Webb, JC Thrash Microbiology Resource Announcements 9 (49), 10.1128/mra. 01119-20, 2020 | 1 | 2020 |
| The Study of Overflow Metabolism and Kinetics in a Model of Metabolism and Gene Expression of Escherichia Coli C Cheng University of California, San Diego, 2017 | 1 | 2017 |
| Functional Decomposition of Metabolism reveals gross imbalance in the energy budget of aerobically growing bacteria M Mori, C Cheng, B Taylor, T Hwa APS March Meeting Abstracts 2023, G10. 003, 2023 | | 2023 |
| Functional analysis of metabolism: a global approach unravels fluxes and protein allocation in E. coli M Mori, C Cheng, T Hwa APS March Meeting Abstracts 2022, D04. 002, 2022 | | 2022 |
