Juan Caballero Pérez

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Luis Alfredo Cruz-RamírezProfesor Investigador CINVESTAV 3C UGA-LANGEBIOVerified email at cinvestav.mx
Gwênlyn GlusmanInstitute for Systems BiologyVerified email at isbscience.org
Leroy HoodInstitute for Systems BiologyVerified email at systemsbiology.org
Mario A. Arteaga-VazquezInstitute for Biotechnology and Applied Ecology - Universidad Veracruzana (INBIOTECA-UV)Verified email at uv.mx
Herrera-Estrella LuisCinvestav (Mexico)/TTU(Texas)Verified email at cinvestav.mx
Jared RoachVerified email at systemsbiology.org
Annie Espinal-CentenoLangebio-CinvestavVerified email at cinvestav.mx
Denise MauldinAltius Institute for Biomedical ScienceVerified email at altius.org
ikram blilouBiological and Environmental Sciences and Engineering, King Abdullah Univerisity of Science andVerified email at kaust.edu.sa
Luis D. AlcarazProfessor, Facultad de Ciencias, Universidad Nacional Autónoma de México, UNAMVerified email at ciencias.unam.mx
Víctor Hugo Hernández ElizárragaPosdoctoral Researcher | University of MinnesotaVerified email at umn.edu
Octavio Martínez de la Vega, PhD.Professor Unidad de Genómica Avanzada (Langebio) - Cinvestav Irapuato - MéxicoVerified email at cinvestav.mx
Nathan D. PriceProfessor, Buck Institute for Research on AgingVerified email at buckinstitute.org
Ben ScheresWageningen University ResearchVerified email at uu.nl
Jorge A. Acosta-GallegosINIFAPVerified email at inifap.gob.mx
Irineo Torres-PachecoProfessor of BiosystemsVerified email at uaq.mx
Carlos L. Calderón-VázquezProfesor, Departamento de Biotecnología Agrícola. IPNVerified email at ipn.mx
Enrique Ibarra-LacletteResearch scientist, Red de Estudios Moleculares Avanzados, Instituto de Ecología A.C. (INECOL)Verified email at inecol.mx
Germán Bonilla-RossoAgroscopeVerified email at agroscope.admin.ch
Alfredo Herrera-EstrellaProfessor of Molecular Biology, Langebio, CinvestavVerified email at cinvestav.mx

Juan Caballero Pérez

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Computational Biology Bioinformatics Genomics


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Insights into land plant evolution garnered from the Marchantia polymorpha genome JL Bowman, T Kohchi, KT Yamato, J Jenkins, S Shu, K Ishizaki, ... Cell 171 (2), 287-304. e15, 2017	1037	2017
Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs RE Green, EL Braun, J Armstrong, D Earl, N Nguyen, G Hickey, ... Science 346 (6215), 1254449, 2014	367	2014
A bistable circuit involving SCARECROW-RETINOBLASTOMA integrates cues to inform asymmetric stem cell division A Cruz-Ramírez, S Díaz-Triviño, I Blilou, VA Grieneisen, R Sozzani, ... Cell 150 (5), 1002-1015, 2012	305	2012
Kaviar: an accessible system for testing SNV novelty G Glusman, J Caballero, DE Mauldin, L Hood, JC Roach Bioinformatics 27 (22), 3216-3217, 2011	248	2011
A family of microRNAs present in plants and animals M Arteaga-Vázquez, J Caballero-Pérez, JP Vielle-Calzada The Plant Cell 18 (12), 3355-3369, 2006	209	2006
Transcript profiling of Zea mays roots reveals gene responses to phosphate deficiency at the plant-and species-specific levels C Calderon-Vazquez, E Ibarra-Laclette, J Caballero-Perez, ... Journal of experimental botany 59 (9), 2479, 2008	165	2008
The genome of Bacillus coahuilensis reveals adaptations essential for survival in the relic of an ancient marine environment LD Alcaraz, G Olmedo, G Bonilla, R Cerritos, G Hernández, A Cruz, ... Proceedings of the National Academy of Sciences 105 (15), 5803, 2008	129	2008
An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge CA Brownstein, AH Beggs, N Homer, B Merriman, TW Yu, KC Flannery, ... Genome biology 15, 1-18, 2014	123	2014
MGnify: the microbiome sequence data analysis resource in 2023 L Richardson, B Allen, G Baldi, M Beracochea, ML Bileschi, T Burdett, ... Nucleic Acids Research 51 (D1), D753-D759, 2023	113	2023
Ancient origin and recent innovations of RNA Polymerase IV and V Y Huang, T Kendall, ES Forsythe, A Dorantes-Acosta, S Li, ... Molecular Biology and Evolution, 2015	95	2015
Cell type-specific genes show striking and distinct patterns of spatial expression in the mouse brain Y Ko, SA Ament, JA Eddy, J Caballero, JC Earls, L Hood, ND Price Proceedings of the National Academy of Sciences 110 (8), 3095-3100, 2013	90	2013
Fat replacers in low‐fat Mexican Manchego cheese C Lobato‐Calleros, JC Robles‐Martinez, JF Caballero‐Perez, ... Journal of Texture Studies 32 (1), 1-14, 2001	89	2001
Relationship estimation from whole-genome sequence data H Li, G Glusman, H Hu, J Caballero, R Hubley, D Witherspoon, ... PLoS genetics 10 (1), e1004144, 2014	87	2014
Multiple lineages of ancient CR1 retroposons shaped the early genome evolution of amniotes A Suh, G Churakov, MP Ramakodi, RN Platt, J Jurka, KK Kojima, ... Genome biology and evolution 7 (1), 205-217, 2015	64	2015
Identification of novel drought-tolerant-associated SNPs in common bean (Phaseolus vulgaris) E Villordo-Pineda, MM González-Chavira, P Giraldo-Carbajo, ... Frontiers in Plant Science 6, 546, 2015	57	2015
Evaluation of different fermentation processes for use by small cocoa growers in Mexico C Hernández‐Hernández, PA López‐Andrade, MA Ramírez‐Guillermo, ... Food science & nutrition 4 (5), 690-695, 2016	53	2016
A cell-surface membrane protein signature for glioblastoma D Ghosh, CC Funk, J Caballero, N Shah, K Rouleau, JC Earls, ... Cell systems 4 (5), 516-529. e7, 2017	46	2017
Functional analysis of the Arabidopsis PLDZ2 promoter reveals an evolutionarily conserved low-Pi-responsive transcriptional enhancer element A Oropeza-Aburto, A Cruz-Ramírez, GJ Acevedo-Hernández, ... Journal of experimental botany 63 (5), 2189-2202, 2012	44	2012
Cooked common beans (Phaseolus vulgaris L.) modulate renal genes in streptozotocin-induced diabetic rats C Lomas-Soria, IF Pérez-Ramírez, J Caballero-Pérez, ... The Journal of nutritional biochemistry 26 (7), 761-768, 2015	37	2015
Optimal Scaling of Digital Transcriptomes G Glusman, J Caballero, M Robinson, B Kutlu, L Hood PLOS ONE 8 (11), e77885, 2013	35	2013

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