David Hoksza
David Hoksza
Charles University in Prague
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TítuloCitado porAño
Efficient RNA pairwise structure comparison by SETTER method
D Hoksza, D Svozil
Bioinformatics 28 (14), 1858-1864, 2012
292012
Molpher: a software framework for systematic chemical space exploration
D Hoksza, P Škoda, M Voršilák, D Svozil
Journal of cheminformatics 6 (1), 7, 2014
262014
Improving the performance of M-tree family by nearest-neighbor graphs
T Skopal, D Hoksza
East European Conference on Advances in Databases and Information Systems …, 2007
202007
Improving protein-ligand binding site prediction accuracy by classification of inner pocket points using local features
R Krivák, D Hoksza
Journal of cheminformatics 7 (1), 1-13, 2015
192015
SETTER: web server for RNA structure comparison
P Čech, D Svozil, D Hoksza
Nucleic acids research 40 (W1), W42-W48, 2012
192012
SProt: sphere-based protein structure similarity algorithm
J Galgonek, D Hoksza, T Skopal
Proteome science 9 (S1), S20, 2011
152011
P2Rank: machine learning based tool for rapid and accurate prediction of ligand binding sites from protein structure
R Krivák, D Hoksza
Journal of cheminformatics 10 (1), 39, 2018
112018
Parametrised Hausdorff Distance as a Non-Metric Similarity Model for Tandem Mass Spectrometry.
J Novák, D Hoksza
DATESO, 1-12, 2010
102010
MultiSETTER: web server for multiple RNA structure comparison
P Čech, D Hoksza, D Svozil
BMC bioinformatics 16 (1), 253, 2015
82015
Multiple 3D RNA structure superposition using neighbor joining
D Hoksza, D Svozil
IEEE/ACM transactions on computational biology and bioinformatics 12 (3 …, 2014
82014
Non-metric similarity search of tandem mass spectra including posttranslational modifications
J Novák, T Skopal, D Hoksza, J Lokoč
Journal of Discrete Algorithms 13, 19-31, 2012
82012
TRAVeLer: a tool for template-based RNA secondary structure visualization
R Elias, D Hoksza
BMC bioinformatics 18 (1), 487, 2017
72017
Exploration of chemical space by molecular morphing
D Hoksza, D Svozil
2011 IEEE 11th International Conference on Bioinformatics and Bioengineering …, 2011
72011
Ddpin-distance and density based protein indexing
D Hoksza
2009 IEEE Symposium on Computational Intelligence in Bioinformatics and …, 2009
72009
Index-based approach to similarity search in protein and nucleotide databases
D Hoksza, T Skopal
CEUR Proc. Dateso 235, 67-80, 2007
72007
Using Neo4j for mining protein graphs: a case study
D Hoksza, J Jelínek
2015 26th International Workshop on Database and Expert Systems Applications …, 2015
62015
P2RANK: Knowledge-Based Ligand Binding Site Prediction Using Aggregated Local Features
R Krivák, D Hoksza
International Conference on Algorithms for Computational Biology, 41-52, 2015
62015
MolArt: a molecular structure annotation and visualization tool
D Hoksza, P Gawron, M Ostaszewski, R Schneider
Bioinformatics 34 (23), 4127-4128, 2018
42018
Utilizing knowledge base of amino acids structural neighborhoods to predict protein-protein interaction sites
J Jelínek, P Škoda, D Hoksza
BMC bioinformatics 18 (15), 492, 2017
42017
Benchmarking platform for ligand-based virtual screening
P Škoda, D Hoksza
2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2016
42016
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