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Julio Augusto Freyre-González (orcid.org/0000-0001-7061-7637)
Julio Augusto Freyre-González (orcid.org/0000-0001-7061-7637)
Head of the Regulatory Systems Biology Research Group, Center for Genomic Sciences, UNAM, Mexico
Dirección de correo verificada de ccg.unam.mx - Página principal
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Modular analysis of the transcriptional regulatory network of< i> E. coli</i>
O Resendis-Antonio, JA Freyre-González, R Menchaca-Méndez, ...
TRENDS in Genetics 21 (1), 16-20, 2005
1252005
Identification of regulatory network topological units coordinating the genome-wide transcriptional response to glucose in Escherichia coli
RM Gutierrez-Ríos, JA Freyre-Gonzalez, O Resendis, J Collado-Vides, ...
BMC microbiology 7 (1), 53, 2007
782007
Functional architecture of Escherichia coli: new insights provided by a natural decomposition approach
JA Freyre-González, JA Alonso-Pavón, LG Treviño-Quintanilla, ...
Genome biology 9 (10), R154, 2008
532008
Calcitriol increases Dicer expression and modifies the microRNAs signature in SiHa cervical cancer cells
RJ González-Duarte, V Cázares-Ordoñez, S Romero-Córdoba, L Díaz, ...
Biochemistry and Cell Biology 93 (4), 376-384, 2015
362015
Anti-sigma factors in E. coli: common regulatory mechanisms controlling sigma factors availability
L Gerardo Trevino-Quintanilla, J Augusto Freyre-Gonzalez, ...
Current genomics 14 (6), 378-387, 2013
342013
Lessons from the modular organization of the transcriptional regulatory network of Bacillus subtilis
JA Freyre-González, AM Manjarrez-Casas, E Merino, M Martinez-Nuñez, ...
BMC Systems Biology 7 (1), 127, 2013
332013
Abasy Atlas: a comprehensive inventory of systems, global network properties and systems-level elements across bacteria
MA Ibarra-Arellano, AI Campos-González, LG Treviño-Quintanilla, ...
Database 2016, baw089, 2016
212016
Analyzing Regulatory Networks in Bacteria
JA Freyre-Gonzalez, LG Trevino-Quintanilla
Nature Education 3 (9), 24, 2010
202010
Prokaryotic regulatory systems biology: Common principles governing the functional architectures of Bacillus subtilis and Escherichia coli unveiled by the natural decomposition …
JA Freyre-González, LG Treviño-Quintanilla, IA Valtierra-Gutiérrez, ...
Journal of biotechnology 161 (3), 278-286, 2012
192012
Functional architecture and global properties of the Corynebacterium glutamicum regulatory network: Novel insights from a dataset with a high genomic coverage
JA Freyre-Gonzalez, A Tauch
Journal of Biotechnology 257, 199-210, 2017
182017
Abasy Atlas v2.2: The most comprehensive and up-to-date inventory of meta-curated, historical, bacterial regulatory networks, their completeness and system-level characterization
JM Escorcia-Rodríguez, A Tauch, JA Freyre-González
Computational and Structural Biotechnology Journal 18, 1228-1237, 2020
162020
Evolutionary constraints on the complexity of genetic regulatory networks allow predictions of the total number of genetic interactions
AI Campos, JA Freyre-González
Scientific Reports 9 (1), 3618, 2019
112019
Identification of network topological units coordinating the global expression response to glucose in Bacillus subtilis and its comparison to Escherichia coli
CD Vázquez, JA Freyre-González, G Gosset, JA Loza, RM Gutiérrez-Ríos
BMC microbiology 9 (1), 176, 2009
102009
Corynebacterium glutamicum Regulation beyond Transcription: Organizing Principles and Reconstruction of an Extended Regulatory Network Incorporating Regulations Mediated by …
JM Escorcia-Rodríguez, A Tauch, JA Freyre-González
Microorganisms 9 (7), 1395, 2021
72021
Non-synonymous to synonymous substitutions suggest that orthologs tend to keep their functions, while paralogs are a source of functional novelty
GMH JM Escorcia-Rodríguez, M Esposito, JA Freyre-Gonzalez
PeerJ 10, e13843, 2022
62022
Molecular characterization of chloranilic acid degradation in Pseudomonas putida TQ07
LG Treviño-Quintanilla, JA Freyre-González, RA Guillén-Garcés, C Olvera
The Journal of Microbiology 49 (6), 974-980, 2011
52011
Curation, inference, and assessment of a globally reconstructed gene regulatory network for Streptomyces coelicolor
A Zorro-Aranda, JM Escorcia-Rodríguez, JK González-Kise, ...
Scientific Reports 12 (1), 2840, 2022
42022
Improving gene regulatory network inference and assessment: The importance of using network structure
JM Escorcia-Rodríguez, E Gaytan-Nuñez, EM Hernandez-Benitez, ...
Frontiers in Genetics 14, 1143382, 2023
32023
System principles governing the organization, architecture, dynamics, and evolution of gene regulatory networks
JA Freyre-González, JM Escorcia-Rodríguez, LF Gutiérrez-Mondragón, ...
Frontiers in Bioengineering and Biotechnology 10, 798, 2022
32022
Rhizobium etli CFN42 proteomes showed isoenzymes in free-living and symbiosis with a different transcriptional regulation inferred from a transcriptional regulatory network
H Taboada-Castro, J Gil, L Gómez-Caudillo, JM Escorcia-Rodríguez, ...
Frontiers in Microbiology 13, 947678, 2022
12022
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