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Julio Augusto Freyre-González (orcid.org/0000-0001-7061-7637)
Julio Augusto Freyre-González (orcid.org/0000-0001-7061-7637)
Head of the Regulatory Systems Biology Research Group, Center for Genomic Sciences, UNAM, Mexico
Dirección de correo verificada de ccg.unam.mx - Página principal
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Año
Modular analysis of the transcriptional regulatory network of< i> E. coli</i>
O Resendis-Antonio, JA Freyre-González, R Menchaca-Méndez, ...
TRENDS in Genetics 21 (1), 16-20, 2005
1282005
Identification of regulatory network topological units coordinating the genome-wide transcriptional response to glucose in Escherichia coli
RM Gutierrez-Ríos, JA Freyre-Gonzalez, O Resendis, J Collado-Vides, ...
BMC microbiology 7 (1), 53, 2007
902007
Functional architecture of Escherichia coli: new insights provided by a natural decomposition approach
JA Freyre-González, JA Alonso-Pavón, LG Treviño-Quintanilla, ...
Genome biology 9 (10), R154, 2008
522008
Calcitriol increases Dicer expression and modifies the microRNAs signature in SiHa cervical cancer cells
RJ González-Duarte, V Cázares-Ordoñez, S Romero-Córdoba, L Díaz, ...
Biochemistry and Cell Biology 93 (4), 376-384, 2015
412015
Anti-sigma factors in E. coli: common regulatory mechanisms controlling sigma factors availability
L Gerardo Trevino-Quintanilla, J Augusto Freyre-Gonzalez, ...
Current genomics 14 (6), 378-387, 2013
372013
Lessons from the modular organization of the transcriptional regulatory network of Bacillus subtilis
JA Freyre-González, AM Manjarrez-Casas, E Merino, M Martinez-Nuñez, ...
BMC Systems Biology 7 (1), 127, 2013
352013
Abasy Atlas: a comprehensive inventory of systems, global network properties and systems-level elements across bacteria
MA Ibarra-Arellano, AI Campos-González, LG Treviño-Quintanilla, ...
Database 2016, baw089, 2016
222016
Prokaryotic regulatory systems biology: Common principles governing the functional architectures of Bacillus subtilis and Escherichia coli unveiled by the natural decomposition …
JA Freyre-González, LG Treviño-Quintanilla, IA Valtierra-Gutiérrez, ...
Journal of biotechnology 161 (3), 278-286, 2012
212012
Analyzing Regulatory Networks in Bacteria
JA Freyre-Gonzalez, LG Trevino-Quintanilla
Nature Education 3 (9), 24, 2010
212010
Abasy Atlas v2.2: The most comprehensive and up-to-date inventory of meta-curated, historical, bacterial regulatory networks, their completeness and system-level characterization
JM Escorcia-Rodríguez, A Tauch, JA Freyre-González
Computational and Structural Biotechnology Journal 18, 1228-1237, 2020
202020
Functional architecture and global properties of the Corynebacterium glutamicum regulatory network: Novel insights from a dataset with a high genomic coverage
JA Freyre-Gonzalez, A Tauch
Journal of Biotechnology 257, 199-210, 2017
172017
Improving gene regulatory network inference and assessment: The importance of using network structure
JM Escorcia-Rodríguez, E Gaytan-Nuñez, EM Hernandez-Benitez, ...
Frontiers in Genetics 14, 1143382, 2023
132023
Curation, inference, and assessment of a globally reconstructed gene regulatory network for Streptomyces coelicolor
A Zorro-Aranda, JM Escorcia-Rodríguez, JK González-Kise, ...
Scientific Reports 12 (1), 2840, 2022
112022
Identification of network topological units coordinating the global expression response to glucose in Bacillus subtilis and its comparison to Escherichia coli
CD Vázquez, JA Freyre-González, G Gosset, JA Loza, RM Gutiérrez-Ríos
BMC microbiology 9 (1), 176, 2009
112009
Evolutionary constraints on the complexity of genetic regulatory networks allow predictions of the total number of genetic interactions
AI Campos, JA Freyre-González
Scientific Reports 9 (1), 3618, 2019
102019
Non-synonymous to synonymous substitutions suggest that orthologs tend to keep their functions, while paralogs are a source of functional novelty
GMH JM Escorcia-Rodríguez, M Esposito, JA Freyre-Gonzalez
PeerJ 10, e13843, 2022
72022
Corynebacterium glutamicum Regulation beyond Transcription: Organizing Principles and Reconstruction of an Extended Regulatory Network Incorporating Regulations Mediated by …
JM Escorcia-Rodríguez, A Tauch, JA Freyre-González
Microorganisms 9 (7), 1395, 2021
72021
System principles governing the organization, architecture, dynamics, and evolution of gene regulatory networks
JA Freyre-González, JM Escorcia-Rodríguez, LF Gutiérrez-Mondragón, ...
Frontiers in Bioengineering and Biotechnology 10, 888732, 2022
52022
Molecular characterization of chloranilic acid degradation in Pseudomonas putida TQ07
LG Treviño-Quintanilla, JA Freyre-González, RA Guillén-Garcés, C Olvera
The Journal of Microbiology 49 (6), 974-980, 2011
42011
Rhizobium etli CFN42 proteomes showed isoenzymes in free-living and symbiosis with a different transcriptional regulation inferred from a transcriptional regulatory network
H Taboada-Castro, J Gil, L Gómez-Caudillo, JM Escorcia-Rodríguez, ...
Frontiers in Microbiology 13, 947678, 2022
32022
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