| Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open … J Guinney, T Wang, TD Laajala, KK Winner, JC Bare, EC Neto, SA Khan, ... The Lancet Oncology 18 (1), 132-142, 2017 | 161 | 2017 |
| Causal integration of multi‐omics data with prior knowledge to generate mechanistic hypotheses A Dugourd, C Kuppe, M Sciacovelli, E Gjerga, A Gabor, KB Emdal, ... Molecular Systems Biology 17 (1), e9730, 2021 | 107 | 2021 |
| A pipeline for the reconstruction and evaluation of context-specific human metabolic models at a large-scale V Vieira, J Ferreira, M Rocha PLoS computational biology 18 (6), e1009294, 2022 | 15 | 2022 |
| Troppo - A Python Framework for the Reconstruction of Context-Specific Metabolic Models J Ferreira, V Vieira, J Gomes, S Correia, M Rocha Practical Applications of Computational Biology and Bioinformatics, 13th …, 2020 | 14 | 2020 |
| CoBAMP: a Python framework for metabolic pathway analysis in constraint-based models V Vieira, M Rocha Bioinformatics 35 (24), 5361-5362, 2019 | 11 | 2019 |
| Comparison of pathway analysis and constraint-based methods for cell factory design V Vieira, P Maia, M Rocha, I Rocha BMC bioinformatics 20, 1-15, 2019 | 9 | 2019 |
| Reconstruction of tissue-specific genome-scale metabolic models for human cancer stem cells T Barata, V Vieira, R Rodrigues, RP das Neves, M Rocha Computers in Biology and Medicine 142, 105177, 2022 | 7 | 2022 |
| A model integration pipeline for the improvement of human genome-scale metabolic reconstructions V Vieira, J Ferreira, R Rodrigues, F Liu, M Rocha Journal of integrative bioinformatics 16 (1), 20180068, 2019 | 7 | 2019 |
| Genome-Scale Metabolic Models J Ferreira, V Vieira, M Rocha Academic Press, 2021 | 2 | 2021 |
| Development of an integrated framework for minimal cut set enumeration in constraint-based models V Vieira, P Maia, I Rocha, M Rocha 10th International Conference on Practical Applications of Computational …, 2016 | 2 | 2016 |
| Development of a framework for metabolic pathway analysis-driven strain optimization methods V Vieira, P Maia, I Rocha, M Rocha Interdisciplinary Sciences: Computational Life Sciences 9, 46-55, 2017 | 1 | 2017 |
| Development of pathway analysis based algorithms for strain optimization V Vieira, M Rocha, I Rocha, P Maia Bioinformatics Open Days 2016-Book of Abstracts, 26-27, 2016 | 1 | 2016 |
| Integrative pathway analysis approaches for cancer research and drug development JVC Vieira | | 2022 |
| HABIT–a webserver for interactive T cell neoepitope discovery J Martins, C Magalhães, V Vieira, M Rocha, NS Osório bioRxiv, 535716, 2019 | | 2019 |
| Metabolite integration pipeline for the improvement of human metabolic models V Vieira, J Ferreira, R Rodrigues, M Rocha Practical Applications of Computational Biology and Bioinformatics, 12th …, 2019 | | 2019 |
| A DREAM challenge to build prediction models for short-term discontinuation of docetaxel in metastatic castration-resistant prostate cancer S Correia, AA Freitas, M Rocha, V Vieira American Society of Clinical Oncology, 2017 | | 2017 |
| Comparing knockout strategies from in silico rational strain design tools JVC Vieira, P Maia, M Rocha, I Rocha | | 2015 |
| Angioplastia coronaria no paciente idoso WA Pimentel Filho, JR Buchler, SF Assis, JAM Souza, N Neves, ... Boletim do Centro de Cardiologia Nao Invasiva 6 (3), 1-4, 1991 | | 1991 |
