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Dominik Kopczynski
Dominik Kopczynski
Dirección de correo verificada de univie.ac.at
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Landscape of submitochondrial protein distribution
FN Vögtle, JM Burkhart, H Gonczarowska-Jorge, C Kücükköse, AA Taskin, ...
Nature communications 8 (1), 290, 2017
1352017
Identification of key lipids critical for platelet activation by comprehensive analysis of the platelet lipidome
B Peng, S Geue, C Coman, P Münzer, D Kopczynski, C Has, N Hoffmann, ...
Blood, The Journal of the American Society of Hematology 132 (5), e1-e12, 2018
892018
LipidCreator workbench to probe the lipidomic landscape
B Peng, D Kopczynski, BS Pratt, CS Ejsing, B Burla, M Hermansson, ...
Nature Communications 11 (1), 2057, 2020
672020
Multi-OMICS: a critical technical perspective on integrative lipidomics approaches
D Kopczynski, C Coman, RP Zahedi, K Lorenz, A Sickmann, R Ahrends
Biochimica et Biophysica Acta (BBA)-Molecular and Cell Biology of Lipids …, 2017
422017
Peak detection method evaluation for ion mobility spectrometry by using machine learning approaches
AC Hauschild, D Kopczynski, M D’Addario, JI Baumbach, S Rahmann, ...
Metabolites 3 (2), 277-293, 2013
422013
Introducing the lipidomics minimal reporting checklist
JG McDonald, CS Ejsing, D Kopczynski, M Holčapek, J Aoki, M Arita, ...
Nature metabolism 4 (9), 1086-1088, 2022
392022
A modular computational framework for automated peak extraction from ion mobility spectra
M D’Addario, D Kopczynski, JI Baumbach, S Rahmann
BMC bioinformatics 15, 1-12, 2014
302014
Guiding the choice of informatics software and tools for lipidomics research applications
Z Ni, M Wölk, G Jukes, K Mendivelso Espinosa, R Ahrends, L Aimo, ...
Nature methods 20 (2), 193-204, 2023
262023
Peak modeling for ion mobility spectrometry measurements
D Kopczynski, JI Baumbach, S Rahmann
2012 Proceedings of the 20th European Signal Processing Conference (EUSIPCO …, 2012
252012
Goslin 2.0 implements the recent lipid shorthand nomenclature for MS-derived lipid structures
D Kopczynski, N Hoffmann, B Peng, G Liebisch, F Spener, R Ahrends
Analytical chemistry 94 (16), 6097-6101, 2022
162022
Goslin: A Grammar of Succinct Lipid Nomenclature
D Kopczynski, N Hoffmann, B Peng, R Ahrends
Analytical Chemistry 92 (16), 10957–10960, 2020
162020
Toward zero variance in proteomics sample preparation: positive-pressure FASP in 96-well format (PF96) enables highly reproducible, time-and cost-efficient analysis of sample …
S Loroch, D Kopczynski, AC Schneider, C Schumbrutzki, I Feldmann, ...
Journal of Proteome Research 21 (4), 1181-1188, 2022
142022
An online peak extraction algorithm for ion mobility spectrometry data
D Kopczynski, S Rahmann
Algorithms in Bioinformatics, Algorithms in Bioinformatics 8701, 232-246, 2014
132014
A current encyclopedia of bioinformatics tools, data formats and resources for mass spectrometry lipidomics
N Hoffmann, G Mayer, C Has, D Kopczynski, F Al Machot, D Schwudke, ...
Metabolites 12 (7), 584, 2022
122022
Computational proteomics tools for identification and quality control
D Kopczynski, A Sickmann, R Ahrends
Journal of Biotechnology 261, 126-130, 2017
112017
A detailed comparison of analysis processes for MCC-IMS data in disease classification—Automated methods can replace manual peak annotations
S Horsch, D Kopczynski, E Kuthe, JI Baumbach, S Rahmann, ...
Plos one 12 (9), e0184321, 2017
102017
PeptideMapper: efficient and versatile amino acid sequence and tag mapping
D Kopczynski, H Barsnes, PR Njølstad, A Sickmann, M Vaudel, ...
Bioinformatics 33 (13), 2042-2044, 2017
92017
Identification of herbal teas and their compounds eliciting antiviral activity against SARS-CoV-2 in vitro
VTK Le-Trilling, D Mennerich, C Schuler, R Sakson, JK Lill, SS Kasarla, ...
BMC biology 20 (1), 264, 2022
72022
Proceedings of the EuBIC-MS 2020 Developers’ Meeting
C Ashwood, W Bittremieux, EW Deutsch, NT Doncheva, V Dorfer, ...
EuPA Open Proteomics 24, 1-6, 2020
62020
Universally available herbal teas based on sage and perilla elicit potent antiviral activity against SARS-CoV-2 variants of concern by HMOX-1 upregulation in human cells
VTK Le-Trilling, D Mennerich, C Schuler, R Sakson, JK Lill, D Kopczynski, ...
bioRxiv, 2020.11. 18.388710, 2020
62020
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Artículos 1–20