Robert Hubley
Cited by
Cited by
Initial sequencing and analysis of the human genome
ES Lander, LM Linton, B Birren, C Nusbaum, MC Zody, J Baldwin, ...
Nature 409 (6822), 860-921, 2001
AFA Smit, R Hubley, P Green
Published on the web at http://www. repeatmasker. org, 1996
RepeatModeler2: automated genomic discovery of transposable element families
JM Flynn, R Hubley, C Goubert, J Rosen, AG Clark, C Feschotte, ...
BioRxiv, 856591, 2019
Analysis of genetic inheritance in a family quartet by whole-genome sequencing
JC Roach, G Glusman, AFA Smit, CD Huff, R Hubley, PT Shannon, ...
Science 328 (5978), 636-639, 2010
The UCSC Genome Browser database: 2015 update
KR Rosenbloom, J Armstrong, GP Barber, J Casper, H Clawson, ...
Nucleic acids research 43 (D1), D670-D681, 2015
A common open representation of mass spectrometry data and its application to proteomics research
PGA Pedrioli, JK Eng, R Hubley, M Vogelzang, EW Deutsch, B Raught, ...
Nature biotechnology 22 (11), 1459-1466, 2004
The genome of a songbird
WC Warren, DF Clayton, H Ellegren, AP Arnold, LDW Hillier, A Knstner, ...
Nature 464 (7289), 757-762, 2010
RepeatModeler Open-1.0
AFA Smit, R Hubley
Repeat Masker Website, 2010
Comparative and demographic analysis of orang-utan genomes
DP Locke, LDW Hillier, WC Warren, KC Worley, LV Nazareth, DM Muzny, ...
Nature 469 (7331), 529, 2011
The Dfam database of repetitive DNA families
R Hubley, RD Finn, J Clements, SR Eddy, TA Jones, W Bao, AFA Smit, ...
Nucleic acids research 44 (D1), D81-D89, 2016
Design and implementation of microarray gene expression markup language (MAGE-ML)
PT Spellman, M Miller, J Stewart, C Troup, U Sarkans, S Chervitz, ...
Genome biology 3 (9), research0046. 1, 2002
Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs
RE Green, EL Braun, J Armstrong, D Earl, N Nguyen, G Hickey, ...
Science 346 (6215), 1254449, 2014
Gibbon genome and the fast karyotype evolution of small apes
L Carbone, RA Harris, S Gnerre, KR Veeramah, B Lorente-Galdos, ...
Nature 513 (7517), 195, 2014
Dfam: a database of repetitive DNA based on profile hidden Markov models
TJ Wheeler, J Clements, SR Eddy, R Hubley, TA Jones, J Jurka, AFA Smit, ...
Nucleic acids research 41 (D1), D70-D82, 2013
The common marmoset genome provides insight into primate biology and evolution
TMG Sequencing, KC Worley, WC Warren, J Rogers, D Locke, DM Muzny, ...
Nature genetics 46 (8), 850, 2014
Mobile DNA in Old World monkeys: a glimpse through the rhesus macaque genome
K Han, MK Konkel, J Xing, H Wang, J Lee, TJ Meyer, CT Huang, ...
science 316 (5822), 238-240, 2007
A unified test of linkage analysis and rare-variant association for analysis of pedigree sequence data
H Hu, JC Roach, H Coon, SL Guthery, KV Voelkerding, RL Margraf, ...
Nature Biotechnology, 2014
A call for benchmarking transposable element annotation methods
DR Hoen, G Hickey, G Bourque, J Casacuberta, R Cordaux, C Feschotte, ...
Mobile DNA 6, 2015
Relationship Estimation from Whole-Genome Sequence Data
H Li, G Glusman, H Hu, J Caballero, R Hubley, D Witherspoon, ...
PLoS Genetics 10 (1), e1004144, 2014
Chromosomal haplotypes by genetic phasing of human families
JC Roach, G Glusman, R Hubley, SZ Montsaroff, AK Holloway, ...
The American Journal of Human Genetics 89 (3), 382-397, 2011
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