The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... Genome biology 20, 1-23, 2019 | 352 | 2019 |
Bifidobacterium callitrichidarum sp. nov. from the faeces of the emperor tamarin (Saguinus imperator) M Modesto, S Michelini, MC Sansosti, C De Filippo, D Cavalieri, L Qvirist, ... International Journal of Systematic and Evolutionary Microbiology 68 (1 …, 2018 | 25 | 2018 |
ELM—the Eukaryotic Linear Motif resource—2024 update M Kumar, S Michael, J Alvarado-Valverde, A Zeke, T Lazar, J Glavina, ... Nucleic acids research 52 (D1), D442-D455, 2024 | 8 | 2024 |
Insertions and deletions mediated functional divergence of Rossmann fold enzymes S Toledo-Patiño, S Pascarelli, G Uechi, P Laurino Proceedings of the National Academy of Sciences 119 (48), e2207965119, 2022 | 7 | 2022 |
Structural dynamics shape the fitness window of alanine: glyoxylate aminotransferase M Dindo, S Pascarelli, D Chiasserini, S Grottelli, C Costantini, GI Uechi, ... Protein Science 31 (5), e4303, 2022 | 7 | 2022 |
Binding of single-mutant epidermal growth factor (EGF) ligands alters the stability of the EGF receptor dimer and promotes growth signaling S Pascarelli, D Merzhakupova, GI Uechi, P Laurino Journal of Biological Chemistry 297 (1), 2021 | 6* | 2021 |
CNTNAP2 mutations and autosomal dominant epilepsy with auditory features E Leonardi, E Dazzo, MC Aspromonte, F Tabaro, S Pascarelli, ... Epilepsy Research 139, 51-53, 2018 | 5 | 2018 |
Inter-paralog amino acid inversion events in large phylogenies of duplicated proteins S Pascarelli, P Laurino PLOS Computational Biology 18 (4), e1010016, 2022 | 3 | 2022 |
Folate-producing bifidobacteria: metabolism, genetics, and relevance MR D’Aimmo, M Satti, D Scarafile, M Modesto, S Pascarelli, SA Biagini, ... Microbiome Research Reports 3 (1), 2024 | 1 | 2024 |
Orthology inference at scale with FastOMA S Majidian, Y Nevers, A Yazdizadeh Kharrazi, A Warwick Vesztrocy, ... bioRxiv, 2024.01. 29.577392, 2024 | | 2024 |
Bifidobacterium mellis sp. nov., isolated from the honey stomach of the honey bee Apis mellifera TC Olofsson, M Modesto, S Pascarelli, D Scarafile, P Mattarelli, ... International Journal of Systematic and Evolutionary Microbiology 73 (3), 005766, 2023 | | 2023 |
タンパク質の配列, 構造, ダイナミクスが解き明かすタンパク質機能の多様性 S Pascarelli Okinawa Institute of Science and Technology Graduate University, 2023 | | 2023 |
OIST E&E PREreview Journal Club J Arora, C Clitheroe, FCY Benureau, J Katzke, PV Martin, Y Suzuki, ... Authorea Preprints, 2018 | | 2018 |
PRODRES: Fast protein searches using a protein domain-reduced database S Pascarelli, K Tsirigos, N Shu, C Peters, A Elofsson | | 2017 |