| DeLTA 2.0: A deep learning pipeline for quantifying single-cell spatial and temporal dynamics OM O’Connor, RN Alnahhas, JB Lugagne, MJ Dunlop PLoS computational biology 18 (1), e1009797, 2022 | 58 | 2022 |
| Majority sensing in synthetic microbial consortia RN Alnahhas, M Sadeghpour, Y Chen, AA Frey, W Ott, K Josić, ... Nature Communications 11 (1), 3659, 2020 | 55 | 2020 |
| Long-range temporal coordination of gene expression in synthetic microbial consortia JK Kim, Y Chen, AJ Hirning, RN Alnahhas, K Josić, MR Bennett Nature chemical biology 15 (11), 1102-1109, 2019 | 55 | 2019 |
| Spatiotemporal dynamics of synthetic microbial consortia in microfluidic devices RN Alnahhas, JJ Winkle, AJ Hirning, B Karamched, W Ott, K Josić, ... ACS synthetic biology 8 (9), 2051-2058, 2019 | 47 | 2019 |
| Decaffeination and Measurement of Caffeine Content by Addicted Escherichia coli with a Refactored N-Demethylation Operon from Pseudomonas putida CBB5 EM Quandt, MJ Hammerling, RM Summers, PB Otoupal, B Slater, ... ACS synthetic biology 2 (6), 301-307, 2013 | 31 | 2013 |
| Expanded Genetic Codes Create New Mutational Routes to Rifampicin Resistance in Escherichia coli MJ Hammerling, J Gollihar, C Mortensen, RN Alnahhas, AD Ellington, ... Molecular biology and evolution 33 (8), 2054-2063, 2016 | 16 | 2016 |
| Tolerance of a knotted near-Infrared fluorescent protein to random circular permutation N Pandey, BE Kuypers, B Nassif, EE Thomas, RN Alnahhas, L Segatori, ... Biochemistry 55 (27), 3763-3773, 2016 | 16 | 2016 |
| Moran model of spatial alignment in microbial colonies BR Karamched, W Ott, I Timofeyev, RN Alnahhas, MR Bennett, K Josić Physica D: Nonlinear Phenomena 395, 1-6, 2019 | 14 | 2019 |
| Advances in linking single-cell bacterial stress response to population-level survival RN Alnahhas, MJ Dunlop Current opinion in biotechnology 79, 102885, 2023 | 10 | 2023 |
| The case for decoupling assembly and submission standards to maintain a more flexible registry of biological parts RN Alnahhas, B Slater, Y Huang, C Mortensen, JW Monk, Y Okasheh, ... Journal of Biological Engineering 8, 1-4, 2014 | 7 | 2014 |
| Stochastic neural networks for automatic cell tracking in microscopy image sequences of bacterial colonies S Sarmadi, JJ Winkle, RN Alnahhas, MR Bennett, K Josić, A Mang, ... Mathematical and Computational Applications 27 (2), 22, 2022 | 6 | 2022 |
| Tunable Dynamics in a Multistrain Transcriptional Pulse Generator DM Zong, M Sadeghpour, S Molinari, RN Alnahhas, AJ Hirning, ... ACS Synthetic Biology 12 (12), 3531-3543, 2023 | 3 | 2023 |
| Indirect enrichment of desirable, but less fit phenotypes, from a synthetic microbial community using microdroplet confinement R Ganiga Prabhakar, G Fan, RN Alnahhas, AJ Hirning, MR Bennett, ... ACS Synthetic Biology 12 (4), 1239-1251, 2023 | 1 | 2023 |
| Boundary-Driven Emergent Spatiotemporal Order in Growing Microbial Colonies BR Karamched, W Ott, I Timofeyev, RN Alnahhas, MR Bennett, K Josić bioRxiv, 328583, 2018 | 1 | 2018 |
| Spatiotemporal Dynamics of Synthetic Microbial Consortia RN Alnahhas Rice University, 2019 | | 2019 |
