| Network-based integration of multi-omics data for prioritizing cancer genes C Dimitrakopoulos, SK Hindupur, L Häfliger, J Behr, H Montazeri, MN Hall, ... Bioinformatics 34 (14), 2441-2448, 2018 | 158 | 2018 |
| Functional map of SARS-CoV-2 3CL protease reveals tolerant and immutable sites S Iketani, SJ Hong, J Sheng, F Bahari, B Culbertson, FF Atanaki, ... Cell Host & Microbe 30 (10), 1354-1362. e6, 2022 | 40 | 2022 |
| Hepatocellular carcinoma xenografts established from needle biopsies preserve the characteristics of the originating tumors T Blumer, I Fofana, MS Matter, X Wang, H Montazeri, D Calabrese, ... Hepatology communications 3 (7), 971-986, 2019 | 37 | 2019 |
| Continuous state/action reinforcement learning: A growing self-organizing map approach H Montazeri, S Moradi, R Safabakhsh Neurocomputing 74 (7), 1069-1082, 2011 | 35 | 2011 |
| The individualized genetic barrier predicts treatment response in a large cohort of HIV-1 infected patients N Beerenwinkel, H Montazeri, H Schuhmacher, P Knupfer, V von Wyl, ... PLoS computational biology 9 (8), e1003203, 2013 | 30 | 2013 |
| Large-scale inference of conjunctive Bayesian networks H Montazeri, J Kuipers, R Kouyos, J Böni, S Yerly, T Klimkait, V Aubert, ... Bioinformatics 32 (17), i727-i735, 2016 | 29 | 2016 |
| Discovery of synthetic lethal interactions from large-scale pan-cancer perturbation screens S Srivatsa, H Montazeri, G Bianco, M Coto-Llerena, M Marinucci, CKY Ng, ... Nature communications 13 (1), 7748, 2022 | 26 | 2022 |
| On BCG vaccine protection from COVID-19: a review N Bagheri, H Montazeri SN Comprehensive Clinical Medicine 3, 1261-1271, 2021 | 26 | 2021 |
| GATA3 and MDM2 are synthetic lethal in estrogen receptor-positive breast cancers G Bianco, M Coto-Llerena, J Gallon, V Kancherla, S Taha-Mehlitz, ... Communications biology 5 (1), 373, 2022 | 16 | 2022 |
| PipeIT: a singularity container for molecular diagnostic somatic variant calling on the ion torrent next-generation sequencing platform A Garofoli, V Paradiso, H Montazeri, PM Jermann, G Roma, L Tornillo, ... The Journal of Molecular Diagnostics 21 (5), 884-894, 2019 | 15 | 2019 |
| Estimating HIV-1 fitness characteristics from cross-sectional genotype data S Gopalakrishnan, H Montazeri, S Menz, N Beerenwinkel, W Huisinga PLoS computational biology 10 (11), e1003886, 2014 | 9 | 2014 |
| Estimating the dynamics and dependencies of accumulating mutations with applications to HIV drug resistance H Montazeri, HF Günthard, WL Yang, R Kouyos, N Beerenwinkel, ... Biostatistics 16 (4), 713-726, 2015 | 8 | 2015 |
| Systematic identification of novel cancer genes through analysis of deep shRNA perturbation screens H Montazeri, M Coto-Llerena, G Bianco, E Zangene, S Taha-Mehlitz, ... Nucleic acids research 49 (15), 8488-8504, 2021 | 7 | 2021 |
| Comparing mutational pathways to lopinavir resistance in HIV-1 subtypes B versus C S Posada-Céspedes, G Van Zyl, H Montazeri, J Kuipers, SY Rhee, ... PLoS Computational Biology 17 (9), e1008363, 2021 | 6 | 2021 |
| Pathway-driven analysis of synthetic lethal interactions in cancer using perturbation screens M Karimpour, M Totonchi, M Behmanesh, H Montazeri Life Science Alliance 7 (1), 2024 | 3 | 2024 |
| Bayesian reconstruction of transmission trees from genetic sequences and uncertain infection times H Montazeri, S Little, M Mozaffarilegha, N Beerenwinkel, V DeGruttola Statistical applications in genetics and molecular biology 19 (4-6), 20190026, 2020 | 3 | 2020 |
| SL-scan identifies synthetic lethal interactions in cancer using metabolic networks E Zangene, SA Marashi, H Montazeri Scientific Reports 13 (1), 15763, 2023 | 2 | 2023 |
| Uncovering hidden cancer self-dependencies through analysis of shRNA-level dependency scores Z Toghrayee, H Montazeri Scientific Reports 14 (1), 856, 2024 | 1 | 2024 |
| Somatic Single-Nucleotide Variant Calling from Single-Cell DNA Sequencing Data Using SCAN-SNV S Bahonar, H Montazeri Variant Calling: Methods and Protocols, 267-277, 2022 | 1 | 2022 |
| MDM2 INHIBITOR RESPONSE PREDICTION METHOD S Piscuoglio, C NG KIU Yan, G Bianco, H Montazeri, N Beerenwinkel, ... WO Patent WO2021228814A1, 2021 | | 2021 |
Niko BeerenwinkelProfessor of Computational Biology, ETH ZurichVerified email at bsse.ethz.ch
