Clarisse (Lisa) Marotz
Clarisse (Lisa) Marotz
Native Microbials
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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
Divergent clonal evolution of castration-resistant neuroendocrine prostate cancer
H Beltran, D Prandi, JM Mosquera, M Benelli, L Puca, J Cyrta, C Marotz, ...
Nature medicine 22 (3), 298-305, 2016
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
Contamination in low microbial biomass microbiome studies: issues and recommendations
R Eisenhofer, JJ Minich, C Marotz, A Cooper, R Knight, LS Weyrich
Trends in microbiology 27 (2), 105-117, 2019
American gut: an open platform for citizen science microbiome research
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
Msystems 3 (3), 10.1128/msystems. 00031-18, 2018
Establishing microbial composition measurement standards with reference frames
JT Morton, C Marotz, A Washburne, J Silverman, LS Zaramela, A Edlund, ...
Nature communications 10 (1), 2719, 2019
Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism
A Zarrinpar, A Chaix, ZZ Xu, MW Chang, CA Marotz, A Saghatelian, ...
Nature communications 9 (1), 2872, 2018
The microbiome and human biology
R Knight, C Callewaert, C Marotz, ER Hyde, JW Debelius, D McDonald, ...
Annual review of genomics and human genetics 18, 65-86, 2017
A novel sparse compositional technique reveals microbial perturbations
C Martino, JT Morton, CA Marotz, LR Thompson, A Tripathi, R Knight, ...
MSystems 4 (1), 10.1128/msystems. 00016-19, 2019
Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission
S Karthikeyan, JI Levy, P De Hoff, G Humphrey, A Birmingham, K Jepsen, ...
Nature 609 (7925), 101-108, 2022
Improving saliva shotgun metagenomics by chemical host DNA depletion
CA Marotz, JG Sanders, C Zuniga, LS Zaramela, R Knight, K Zengler
Microbiome 6, 1-9, 2018
The microbiome in posttraumatic stress disorder and trauma-exposed controls: an exploratory study
SMJ Hemmings, S Malan-Müller, LL van den Heuvel, BA Demmitt, ...
Psychosomatic medicine 79 (8), 936-946, 2017
SPOP mutation leads to genomic instability in prostate cancer
G Boysen, CE Barbieri, D Prandi, M Blattner, SS Chae, A Dahija, ...
Elife 4, e09207, 2015
DNA extraction for streamlined metagenomics of diverse environmental samples
C Marotz, A Amir, G Humphrey, J Gaffney, G Gogul, R Knight
Biotechniques 62 (6), 290-293, 2017
Focus: microbiome: treating obesity and metabolic syndrome with fecal microbiota transplantation
CA Marotz, A Zarrinpar
The Yale journal of biology and medicine 89 (3), 383, 2016
Visualizing’omic feature rankings and log-ratios using Qurro
MW Fedarko, C Martino, JT Morton, A González, G Rahman, CA Marotz, ...
NAR genomics and bioinformatics 2 (2), lqaa023, 2020
Impacts of the human gut microbiome on therapeutics
Y Vázquez-Baeza, C Callewaert, J Debelius, E Hyde, C Marotz, JT Morton, ...
Annual review of pharmacology and toxicology 58, 253-270, 2018
Repeated stress dysregulates κ-opioid receptor signaling in the dorsal raphe through a p38α MAPK-dependent mechanism
JC Lemos, CA Roth, DI Messinger, HK Gill, PEM Phillips, C Chavkin
Journal of Neuroscience 32 (36), 12325-12336, 2012
Context-aware dimensionality reduction deconvolutes gut microbial community dynamics
C Martino, L Shenhav, CA Marotz, G Armstrong, D McDonald, ...
Nature biotechnology 39 (2), 165-168, 2021
Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary
C Marotz, A Sharma, G Humphrey, N Gottel, C Daum, JA Gilbert, ...
BioTechniques 67 (1), 29-32, 2019
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