| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 14519 | 2019 |
| Divergent clonal evolution of castration-resistant neuroendocrine prostate cancer H Beltran, D Prandi, JM Mosquera, M Benelli, L Puca, J Cyrta, C Marotz, ... Nature medicine 22 (3), 298-305, 2016 | 1475 | 2016 |
| QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018 | 962 | 2018 |
| Contamination in low microbial biomass microbiome studies: issues and recommendations R Eisenhofer, JJ Minich, C Marotz, A Cooper, R Knight, LS Weyrich Trends in microbiology 27 (2), 105-117, 2019 | 781 | 2019 |
| American gut: an open platform for citizen science microbiome research D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... Msystems 3 (3), 10.1128/msystems. 00031-18, 2018 | 682 | 2018 |
| Establishing microbial composition measurement standards with reference frames JT Morton, C Marotz, A Washburne, J Silverman, LS Zaramela, A Edlund, ... Nature communications 10 (1), 2719, 2019 | 534 | 2019 |
| Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism A Zarrinpar, A Chaix, ZZ Xu, MW Chang, CA Marotz, A Saghatelian, ... Nature communications 9 (1), 2872, 2018 | 432 | 2018 |
| The microbiome and human biology R Knight, C Callewaert, C Marotz, ER Hyde, JW Debelius, D McDonald, ... Annual review of genomics and human genetics 18 (1), 65-86, 2017 | 365 | 2017 |
| A novel sparse compositional technique reveals microbial perturbations C Martino, JT Morton, CA Marotz, LR Thompson, A Tripathi, R Knight, ... MSystems 4 (1), 10.1128/msystems. 00016-19, 2019 | 316 | 2019 |
| Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission S Karthikeyan, JI Levy, P De Hoff, G Humphrey, A Birmingham, K Jepsen, ... Nature 609 (7925), 101-108, 2022 | 291 | 2022 |
| Improving saliva shotgun metagenomics by chemical host DNA depletion CA Marotz, JG Sanders, C Zuniga, LS Zaramela, R Knight, K Zengler Microbiome 6, 1-9, 2018 | 258 | 2018 |
| The microbiome in posttraumatic stress disorder and trauma-exposed controls: an exploratory study SMJ Hemmings, S Malan-Müller, LL van den Heuvel, BA Demmitt, ... Psychosomatic medicine 79 (8), 936-946, 2017 | 224 | 2017 |
| SPOP mutation leads to genomic instability in prostate cancer G Boysen, CE Barbieri, D Prandi, M Blattner, SS Chae, A Dahija, ... Elife 4, e09207, 2015 | 197 | 2015 |
| DNA extraction for streamlined metagenomics of diverse environmental samples C Marotz, A Amir, G Humphrey, J Gaffney, G Gogul, R Knight Biotechniques 62 (6), 290-293, 2017 | 188 | 2017 |
| Focus: microbiome: treating obesity and metabolic syndrome with fecal microbiota transplantation CA Marotz, A Zarrinpar The Yale journal of biology and medicine 89 (3), 383, 2016 | 183 | 2016 |
| Visualizing’omic feature rankings and log-ratios using Qurro MW Fedarko, C Martino, JT Morton, A González, G Rahman, CA Marotz, ... NAR genomics and bioinformatics 2 (2), lqaa023, 2020 | 125 | 2020 |
| Impacts of the human gut microbiome on therapeutics Y Vázquez-Baeza, C Callewaert, J Debelius, E Hyde, C Marotz, JT Morton, ... Annual review of pharmacology and toxicology 58 (1), 253-270, 2018 | 91 | 2018 |
| Context-aware dimensionality reduction deconvolutes gut microbial community dynamics C Martino, L Shenhav, CA Marotz, G Armstrong, D McDonald, ... Nature biotechnology 39 (2), 165-168, 2021 | 76 | 2021 |
| Repeated stress dysregulates κ-opioid receptor signaling in the dorsal raphe through a p38α MAPK-dependent mechanism JC Lemos, CA Roth, DI Messinger, HK Gill, PEM Phillips, C Chavkin Journal of Neuroscience 32 (36), 12325-12336, 2012 | 74 | 2012 |
| Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity JP Shaffer, LF Nothias, LR Thompson, JG Sanders, RA Salido, ... Nature Microbiology 7 (12), 2128-2150, 2022 | 61 | 2022 |
