Marghoob Mohiyuddin

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Mark GersteinProfessor of Biomedical Informatics, Yale UniversityDirección de correo verificada de yale.edu
Wing Hung WongStanford UniversityDirección de correo verificada de stanford.edu
John C. MuResearch Engineer, Bina Technologies part of Roche SequencingDirección de correo verificada de umnhoj.com
John ShalfDepartment Head for Computer Science, Lawrence Berkeley National LaboratoryDirección de correo verificada de lbl.gov
Leonid OlikerComputer Scientist, Lawrence Berkeley National LaboratoryDirección de correo verificada de lbl.gov
Sayed Mohammad Ebrahim SahraeianBioinformatics Scientist, Roche Sequencing SolutionsDirección de correo verificada de roche.com
Katherine YelickAssociate Laboratory Director of Computing Sciences, LBNL and EECS Professor, UC BerkeleyDirección de correo verificada de lbl.gov
James W DEMMELProfessor of EECS and Mathematics, UC BerkeleyDirección de correo verificada de berkeley.edu
Mark HoemmenNVIDIADirección de correo verificada de nvidia.com
Li Tai FangFreenomeDirección de correo verificada de freenome.com
Alexej AbyzovMayo ClinicDirección de correo verificada de mayo.edu
John KubiatowiczUniversity of California at BerkeleyDirección de correo verificada de cs.berkeley.edu
Samuel WilliamsSenior Scientist, Lawrence Berkeley National LaboratoryDirección de correo verificada de lbl.gov
Dr. Jens KruegerWorkday Inc.Dirección de correo verificada de workday.com
Michael F. WehnerLawrence Berkeley National LaboratoryDirección de correo verificada de lbl.gov
Benjamin G. LeeNVIDIA ResearchDirección de correo verificada de nvidia.com
Luca CarloniProfessor and Chair of Computer Science, Columbia UniversityDirección de correo verificada de cs.columbia.edu
Aleksandr BibermanDirección de correo verificada de mit.edu
Johnnie ChanColumbia UniversityDirección de correo verificada de ee.columbia.edu
Hui JiangProfessor of Biostatistics, University of MichiganDirección de correo verificada de umich.edu

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Marghoob Mohiyuddin

Roche Sequencing Solutions

Dirección de correo verificada de roche.com

High-performance computing Bioinformatics Cancer genomics


Título Ordenar por citas Ordenar por año Ordenar por título	Citado por Citado por	Año
Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis SME Sahraeian, M Mohiyuddin, R Sebra, H Tilgner, PT Afshar, KF Au, ... Nature communications 8 (1), 59, 2017	262	2017
Circular DNA elements of chromosomal origin are common in healthy human somatic tissue HD Møller, M Mohiyuddin, I Prada-Luengo, MR Sailani, JF Halling, ... Nature communications 9 (1), 1069, 2018	261	2018
Minimizing communication in sparse matrix solvers M Mohiyuddin, M Hoemmen, J Demmel, K Yelick Proceedings of the Conference on High Performance Computing Networking …, 2009	190	2009
Avoiding communication in sparse matrix computations J Demmel, M Hoemmen, M Mohiyuddin, K Yelick 2008 IEEE International Symposium on Parallel and Distributed Processing, 1-12, 2008	185	2008
MetaSV: an accurate and integrative structural-variant caller for next generation sequencing M Mohiyuddin, JC Mu, J Li, N Bani Asadi, MB Gerstein, A Abyzov, ... Bioinformatics 31 (16), 2741-2744, 2015	154	2015
Structural variants in 3000 rice genomes RR Fuentes, D Chebotarov, J Duitama, S Smith, JF De la Hoz, ... Genome research 29 (5), 870-880, 2019	125	2019
An ensemble approach to accurately detect somatic mutations using SomaticSeq LT Fang, PT Afshar, A Chhibber, M Mohiyuddin, Y Fan, JC Mu, G Gibeling, ... Genome biology 16, 1-13, 2015	116	2015
PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions ND Olson, J Wagner, J McDaniel, SH Stephens, ST Westreich, ... Cell genomics 2 (5), 2022	115	2022
Deep convolutional neural networks for accurate somatic mutation detection SME Sahraeian, R Liu, B Lau, K Podesta, M Mohiyuddin, HYK Lam Nature communications 10 (1), 1041, 2019	108	2019
Analysis of deletion breakpoints from 1,092 humans reveals details of mutation mechanisms A Abyzov, S Li, DR Kim, M Mohiyuddin, AM Stütz, NF Parrish, XJ Mu, ... Nature communications 6 (1), 7256, 2015	92	2015
Analysis of photonic networks for a chip multiprocessor using scientific applications G Hendry, S Kamil, A Biberman, J Chan, BG Lee, M Mohiyuddin, A Jain, ... 2009 3rd ACM/IEEE International Symposium on Networks-on-Chip, 104-113, 2009	89	2009
svclassify: a method to establish benchmark structural variant calls H Parikh, M Mohiyuddin, HYK Lam, H Iyer, D Chen, M Pratt, G Bartha, ... BMC genomics 17, 1-16, 2016	87	2016
Energy-efficient computing for extreme-scale science D Donofrio, L Oliker, J Shalf, MF Wehner, C Rowen, J Krueger, S Kamil, ... Computer 42 (11), 62-71, 2009	81	2009
VarSim: a high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications JC Mu, M Mohiyuddin, J Li, N Bani Asadi, MB Gerstein, A Abyzov, ... Bioinformatics 31 (9), 1469-1471, 2015	73	2015
Fast and accurate read alignment for resequencing JC Mu, H Jiang, A Kiani, M Mohiyuddin, N Bani Asadi, WH Wong Bioinformatics 28 (18), 2366-2373, 2012	73	2012
Hardware/software co-design for energy-efficient seismic modeling J Krueger, D Donofrio, J Shalf, M Mohiyuddin, S Williams, L Oliker, ... Proceedings of 2011 International Conference for High Performance Computing …, 2011	65	2011
Systems and methods for processing nucleic acid sequence data NB Asadi, J Chong, H Chen, M Mohiyuddin, A Doupnik US Patent 9,600,625, 2017	58	2017
Avoiding communication in computing Krylov subspaces J Demmel, M Hoemmen, M Mohiyuddin, K Yelick EECS Dept., UC Berkeley, Tech. Rep. UCB/EECS-2007-123, 2007	51	2007
Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing LT Fang, B Zhu, Y Zhao, W Chen, Z Yang, L Kerrigan, K Langenbach, ... Nature biotechnology 39 (9), 1151-1160, 2021	43	2021
A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency W Jones, B Gong, N Novoradovskaya, D Li, R Kusko, TA Richmond, ... Genome biology 22, 1-38, 2021	30	2021

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