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Matthew A. Richards
Matthew A. Richards
Verified email at systemsbiology.org - Homepage
Title
Cited by
Cited by
Year
Multiscale analysis of independent Alzheimer’s cohorts finds disruption of molecular, genetic, and clinical networks by human herpesvirus
B Readhead, JV Haure-Mirande, CC Funk, MA Richards, P Shannon, ...
Neuron 99 (1), 64-82. e7, 2018
6402018
A synthesis of bacterial and archaeal phenotypic trait data
JS Madin, DA Nielsen, M Brbic, R Corkrey, D Danko, K Edwards, ...
Scientific data 7 (1), 170, 2020
732020
MotifDb: an annotated collection of protein-DNA binding sequence motifs
P Shannon, M Richards
R package version 1 (0), 10.18129, 2014
692014
Exploring hydrogenotrophic methanogenesis: a genome scale metabolic reconstruction of Methanococcus maripaludis
MA Richards, TJ Lie, J Zhang, SW Ragsdale, JA Leigh, ND Price
Journal of bacteriology 198 (24), 3379-3390, 2016
612016
Reproducible big data science: A case study in continuous FAIRness
R Madduri, K Chard, M D’Arcy, SC Jung, A Rodriguez, D Sulakhe, ...
PloS one 14 (4), e0213013, 2019
542019
Atlas of transcription factor binding sites from ENCODE DNase hypersensitivity data across 27 tissue types
CC Funk, AM Casella, S Jung, MA Richards, A Rodriguez, P Shannon, ...
Cell reports 32 (7), 2020
332020
MediaDB: a database of microbial growth conditions in defined media
MA Richards, V Cassen, BD Heavner, NE Ajami, A Herrmann, ...
PLoS One 9 (8), e103548, 2014
262014
Constraint‐based modelling captures the metabolic versatility of Desulfovibrio vulgaris
JJ Flowers, MA Richards, N Baliga, B Meyer, DA Stahl
Environmental microbiology reports 10 (2), 190-201, 2018
142018
MotifDb: An annotated collection of protein-DNA binding sequence motifs. R package version 1.0. 0
P Shannon, M Richards
Computer software], URL: http://bioconductor. org/biocLite, 2014
122014
ProbAnnoWeb and ProbAnnoPy: probabilistic annotation and gap-filling of metabolic reconstructions
B King, T Farrah, MA Richards, M Mundy, E Simeonidis, ND Price
Bioinformatics 34 (9), 1594-1596, 2018
112018
MotifDb: An Annotated Collection of Protein-DNA Binding Sequence Motifs, 2013
P Shannon, M Richards
R package version 1 (0), 0
6
Maintenance chemotherapy for small cell lung cancer—a randomised controlled trial
MH Cullen, DAL Morgan, MA Richards, M Robinson, M Ward, D Cox
Second European Conference on Clinical Oncology and Cancer Nursing …, 1983
41983
Correction: Reproducible big data science: A case study in continuous FAIRness
R Madduri, K Chard, M D’Arcy, SC Jung, A Rodriguez, D Sulakhe, ...
Plos one 18 (11), e0294883, 2023
2023
Metabolic Model Morphing: a method for extending a metabolic reconstruction to related organisms
JT Yurkovich, B King, E Simeonidis, MA Richards, P Baloni, ND Price
The Astrobiology Science Conference (AbSciCon) 2019, 326-250, 2019
2019
O3‐03‐01: MECHANISTIC AND DIRECTIONAL TRANSCRIPTIONAL REGULATORY NETWORKS IN ALZHEIMER'S DISEASE
CC Funk, MA Richards, P Shannon, R Donovan-Maiye, N Rappaport, ...
Alzheimer's & Dementia 14 (7S_Part_19), P1014-P1015, 2018
2018
Integrating manual and automated metabolic engineering methods
MA Richards
University of Illinois at Urbana-Champaign, 2016
2016
Improving Methanosarcina genome-scale models for strain design by incorporating cofactor specificity and free energy constraints
M Richards
University of Illinois at Urbana-Champaign, 2013
2013
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